One thing I read about continually is that if you are dealing with a lot of stress in your life,it can have a massive impact on weight loss..everything else can be perfect but stress messes it up.
If you are thinking hormonal issues,look into the leptin reset program as I have read countless success stories with this protocol.
As for AIP..60 days is a bit of time but for some people it can take a lot longer to help with Auto Immune issues.
It's possible to look at going lower carbs for a few weeks and see if that triggers something.
I notice in your diary that there are tomatoes,onions,nuts,packaged deli meats,hot dogs.I have done A.I.P and would say they are a big no no for someone dealing with an auto immune illness
Check out
http://www.thepaleomom.com/autoimmunity/the-autoimmune-protocol
http://autoimmune-paleo.com (very good website)
http://www.alt-ternativeuniverse.blogspot.ca
Hope it helps

You mentioned the hashimotos (not fun) but where are you at with menopause?

Ok, I think I'm going to bring some divergent opinions here in response to OPs concern why weight loss is not happening.

First, I would agree that free range, grass feed meat is by far the best quality meat you can get. It is better than organic meat, which is different. Organic meat means the animal in question was fed organic feed, which includes grains. Grain fed meat are not as nutritionally superior as grass fed, but nonetheless certainly better than non-organic meats. Nitrate free preserved processed meats contain nitrate containing chemicals derived from sources such as celery seed extract , which kinda defeats the purpose of nitrate free. So, when people think they are avoiding nitrates because the package says "no nitrates preservative added" they still get nitrates, just in a different source, usually in the form of celery seed extract (I personally think it is an abuse of marketers preying on people's lack of knowledge of the plethora of chemicals used in our foodstuffs). Having said that, from a long list of faux pas and things to avoid, nitrates is low on my list. I do try to avoid it, but I know it won't kill me if I have it. If for economic or convenience or whatever reasons you choose to eat processed meats, I don't see a problem with that. If you want a processed meat without exotic chemicals, look for ones that have nothing but salt added to them, like prosciutto (as in the high quality kind, like prosciutto di Parma from Italy).

I looked at OPs food diary, and I can see why she is not losing weight. I see that the carb is often high in some meals, in that the carbs calories are higher than protein and fat. My recommendation is to make sure you eat fat at each meal, and make sure fat is the predominant component in all meals. For example, eating a larabar gives your body a huge sugar rush, spike your insulin, causing fat storage. A better choice that would induce fat burning instead would be celery with almond butter.

By the way, 100 direct reports sounds crazy. I would recommend providing opportunity for some of your "gold nugget" employees, and have a structure set up so that you reduce the 100 direct reports, and convert them to indirect reports (I.e. Manage managers or manage supervisors). I don't see any good coming from 100 people reporting to you directly, it's an inefficient management structure, and it deprives good employees from growth and job satisfaction. It also causes you added stress as it induces a more tactical micromanagement style, as opposed to being more high level and strategic. My two cents. Good luck.