Cardio + MFP

So I'm currently cutting right now and I usually try to burn 400 cals when I do cardio (some days of the week)
When I enter that exercise in the app, it adds more calories and wondering if that's okay? I'm afraid when I add the exercise and the cals go up, I won't lose body fat. Or should I not add the exercise and continue with my daily intake instead? i
Thanks in advance.

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